require('Module:No globals')
local p = {}
local templateArgs = {}
--local info = {}
----------------------------------AUTOMATIC TAXONOMY (module and wikidata versions) -----------
function p.addModuleTaxonomy(frame, taxoboxTable, templateArgs) -- use invoke of module function
local moduleData = require("Module:Sandbox/trappist the monk/taxonomy")
local tree_t = {};
local taxon = templateArgs['taxon'] or templateArgs['parent']
tree_t = moduleData._crawl_tree(taxon, tree_t)
--local output = '\n|-\n|' .. table.concat (tree_t, '<br />') -- dump the whole table
local output = ''
for k,v in pairs (tree_t) do
local parts = mw.text.split(v, ": ", true)
if string.sub(parts[1],1,3) == "'''" then
local styled_rank = string.gsub(parts[1], "'''", "")
local linked_taxon = string.gsub(parts[2], " <small>.*", "")
output = output .. '\n|-\n|' .. styled_rank .. '||' .. linked_taxon
end
end
return output
end
--[[ p.WikidataTaxonomy(frame)
- entry point for Template:Biota infobox/Wikidata
]]
function p.WikidataTaxonomy(frame)
-- get taxon name. This must be the Wikipedia page for the taxon (which is linked to the qid), e.g. Helix (gastropod)
-- an alternative is to have a qid parameter
local taxon = frame:getParent().args['taxon'] or frame.args['taxon'] --or "Felis"
local qid = frame:getParent().args['qid'] or frame.args['qid']
if qid and not taxon then
taxon = mw.wikibase.getSitelink(qid) -- only works if taxon name, page title and taxonomy template match
end
if not qid and not taxon then
return "No valid taxon or qid."
end
templateArgs['taxon'] = taxon -- p.addWikidataTaxonomy() gets the taxon from template parameters
templateArgs['qid'] = qid
-- contruct table comparing wikidata taxonomy and automated taxobox taxonomy
local headerColor = "#ddeeff"
local comment = '<p>Ancestral taxa taken from Wikidata. <br/>Bold taxa show those that will be displayed in taxobox.</p>'
local output = '{|\n|-\n| style="vertical-align:top;" |' .. comment -- outer table
.. '\n{| class="infobox biota" style="text-align: left; font-size:100%;"' -- wikidata ancestry table
output = output .. '\n|- \n! colspan="5" class="section-header" style="text-align:center;background:' .. headerColor .. ';" '
.. '|' .. "Ancestral taxa (from Wikidata)"
.. '\n|- style="text-align:center;background:' .. headerColor .. ';"'
.. '\n! Rank !! Taxon !! colspan="2" | Wikidata ID !! Parents at Wikdata'
templateArgs['display_parents'] = "all"
templateArgs['show_alt_parents'] = true
templateArgs['select_parent'] = frame:getParent().args['select_parent'] or frame.args['select_parent']
output = output .. p._addWikidataTaxonomy(frame)
if not (frame:getParent().args['suppress_autotaxonomy_comparison'] or frame.args['suppress_autotaxonomy_comparison']) then
taxon = taxon:gsub("(.*)%s%(.*%)", "%1") -- remove disambiguation
local automatedTaxonomyList = frame:callParserFunction ('#invoke', {'Autotaxobox/sandbox', 'taxonomyList', taxon})
automatedTaxonomyList = automatedTaxonomyList:gsub("Ancestral taxa", "Ancestral taxa <br/>(from automated taxonomy templates)")
output = output .. '\n|}' -- close wikidata table
.. '\n| style="vertical-align:top;" |' -- cell for automated taxonomy table
.. automatedTaxonomyList
.. '\n|}'
else
output = output .. '\n|}' .. '\n|}' -- close wikidata table and outer table
end
return output
end
function p.getAnchor(frame)
--return "Felis" --mw.title.getCurrentTitle().fragment
end
function p.addWikidataTaxonomy(frame, taxoboxTable, args) -- use invoke of module function
templateArgs = args
return p._addWikidataTaxonomy(frame)
end
function p._addWikidataTaxonomy(frame) -- use invoke of module function
local qid
local taxon = templateArgs['taxon'] or templateArgs['parent'] -- parent set for species and subspeciesbox
if templateArgs['qid'] then
qid = templateArgs['qid'] -- get qid from parameter
else
qid = mw.wikibase.getEntityIdForTitle (taxon) -- get qid from Wikipedia page on taxon
end
if not qid then
return "The taxon name must be the Wikipedia page title. Alternatively provide the Wikidata qid (qid=)."
end
local rows = ""
local row = "| rank || taxon"
local count = 0
while qid and count < 100 do
local taxonInfo = p.getTaxonInfo(qid)
if not taxonInfo.rank then taxonInfo.rank = "unranked" end
if not taxonInfo.taxon then taxonInfo.taxon = "no taxon name" end
if p.showTaxonRow(taxonInfo.rank, taxonInfo.taxon, count) then -- display required rows
local link = ""
local italics = ""
if taxonInfo.rank == "genus" then italics = "''" end
if taxonInfo.siteLink and taxonInfo.siteLink ~= taxonInfo.taxon then link = taxonInfo.siteLink .. "|" end
row = "\n|-\n| " .. p.firstToUpper(taxonInfo.rank)
.. "||" .. italics .. "[[" .. link .. taxonInfo.taxon .. "]]" .. italics
if templateArgs['show_alt_parents'] and taxonInfo.altParents then
row = row .. '||[[:d:' .. qid .. '|' .. qid .. ']]'
.. '||[[:d:' .. qid .. '#P171|[edit]]]'
.. "||" .. taxonInfo.altParents
end
rows = row .. rows
end
if taxonInfo.parent then
qid = taxonInfo.parent -- next parent
else
qid = nil -- no more parents so stop
end
count = count + 1
end
return rows
end
local majorRanks = { "superkingdom", "kingdom", "phylum", "division", "class", "order", "family", "genus", "species" }
function p.showTaxonRow(rank, taxon, count)
local majorRank = false
for k, v in pairs(majorRanks) do
if rank == v then
majorRank = true -- flag major ranks for display
majorRanks[k] = nil -- don't show this class again in hierarchy (e.g. for mammals, birds)
end
end
if majorRank then return true end
if count < (tonumber(templateArgs['display_parents']) or 2) then return true end
if templateArgs['display_parents'] == "all" then return true end
if templateArgs['display_parent_taxa'] then
if string.find(templateArgs['display_parent_taxa'], taxon) then return true end
end
if templateArgs['display_parent_ranks'] then
for v in mw.text.gsplit(templateArgs['display_parent_ranks'], ",", true) do
if rank == mw.text.trim(v) then return true end
end
end
return false
end
function p.getTaxonInfo(qid)
--local rank, taxon, parent
local taxonInfo = {}
--[[
local item = mw.wikibase.getEntity(qid) -- this increments the expensive parser function count
so instead of
item:getBestStatements(property)
use
mw.wikibase.getBestStatements(qid, property)
]]
local statements = mw.wikibase.getBestStatements(qid, 'P105')[1] --taxon rank
if statements and statements.mainsnak and statements.mainsnak.datavalue then
taxonInfo.rank = mw.wikibase.getLabel(statements.mainsnak.datavalue.value.id)
end
local statements = mw.wikibase.getBestStatements(qid, 'P225')[1] -- taxon name
if statements and statements.mainsnak and statements.mainsnak.datavalue then
taxonInfo.taxon = statements.mainsnak.datavalue.value
end
local statements = mw.wikibase.getBestStatements(qid, 'P171') -- taxon parent
local statement = statements[1]
if statement and statement.mainsnak and statement.mainsnak.datavalue then
taxonInfo.parent = statement.mainsnak.datavalue.value.id -- use first value
end
for index, statement in pairs( statements ) do
local id
if statement and statement.mainsnak and statement.mainsnak.datavalue then
id = statement.mainsnak.datavalue.value.id
end
if id then
local label = mw.wikibase.getLabel(id)
local parentString = label .. " ([[:d:" .. id .. "#P171|" .. id .. "]])"
if taxonInfo.altParents then
taxonInfo.altParents = taxonInfo.altParents .. "</br/>" .. parentString
else
taxonInfo.altParents = parentString
end
local selectParent = templateArgs['select_parent'] or "1" -- template parameters read as strings
if selectParent == tostring(index) or selectParent == "last" then
taxonInfo.parent = id
end
end
end
local label = mw.wikibase.getLabel(qid)
if label then taxonInfo.label = label end
local siteLink = mw.wikibase.getSitelink(qid)
if siteLink then taxonInfo.siteLink = siteLink end
return taxonInfo --rank, taxon, parent
end
function p.firstToUpper(str)
return (str:gsub("^%l", string.upper))
end
return p
